Publications

Our list of selected publications for TPX3CAM, EM, X-Ray, Timepix Mass Spectrometry and Miscellaneous.

Selected TPX3CAM publications

“Characterization of planar phosphorescence based oxygen sensors on a TCSPC-PLIM macro-imager”

Sen et. al. (2020)

“A new macro-imager based on Tpx3Cam optical camera for PLIM applications”

Sen et. al. (2020)

“Counting of Hong-Ou-Mandel Bunched Optical Photons Using a Fast Pixel Camera”

Nomerotski et. al. (2020)

“New luminescence lifetime macro-imager based on a Tpx3Cam optical camera”

Sen et. al. (2019)

“Developing a camera-based 3D momentum imaging system capable of 1 Mhits/s”

D.Debrah et. al. (2019)

“Multidimensional quantum illumintation via direct measurement of spectro-temporal correlations”
Yingwen Zhang, et. al, (September, 2019)

“Imaging and time stamping of photons with nanosecond resolution in Timepix based optical cameras”
Andrei Nomerotski, ArXiv , (2019)

“First demonstration of 3D optical readout of a TPC using a single photon sensitive Timepix3 based camera”
A. Roberts, et. al, ArXiv, (2018)

“Spatial characterization of photonic polarization entanglement using a Tpx3Cam intensified fast-camera”
Christopher Ianzano, et. al, ArXiv, (2018)

“Coincidence velocity map imaging using Tpx3Cam, a time stamping optical camera with 1.5 ns timing resolution”
Arthur Zhao, et. al, ArXiv, (2017)

“Characterization of TimepixCam, a fast imager for the time-stamping of optical photons”
Andrei Nomerotski, et. al, Volume 12, (January 2017)

“TimepixCam: a fast optical imager with time-stamping”
M. Fisher-Levine and A. Nomerotski, Volume 11, (March 2016)


Selected EM publications

“3D electron diffraction techniques”

M. Gemmi and A.E. Lanza, Acta Cryst., B75 (2019)

“Electron correlation in channel-resolved strong-field molecular double ionization”

Chuan Cheng, et. al, Phys. Rev. A 100, 053405, (November, 2019)

“Crystal Orientation and Grain Size: Do They Determinate Opto-electronic Properties of MAPbl3 Perovskite?
Loreta A. Muscarella, et. al, Phys. Chem. Lett. 10, 20, 6010 (2019)

“Heterogeneity of nano-sized zeolite crystals? 
Microporous and Mesoporous Materials 294 109897 (2020)
Julian T. C. Wennmacher, Teng Li, Christian Zaubitzer, Mauro Gemmi, Enrico Mugnaioli, TimGruene, Jeroen A.van Bokhoven

“A metal-organic framework for efficient water-based ultra-low-temperature-driven cooling”
Dirk Lenzen, et. al, Nature Comm. 10, 3025 (2019)

“Daliranite, PbHgAs2S5: Determination of the incommensurately modulated structure and revision of the chemical formula”
Arianna E. Lanza, Mauro Gemmi, Luca Bindi, Enrico Mugnaioli, Werner H. Paar
Acta Cryst. B75, 711 2019

“Evidence for subsolidus quartz-coesite transformation in impact ejecta from the Australasian tektie strewn field”
Fabrizio Campanale, Enrico Mugnaioli, Luigi Folco, Mauro Gemmi, Martin R. Lee, Luke Daly, Billy P. Glass
Geo.Cosm. Acta 264, 105, 2019

“Automated serial rotation electron diffraction combines with cluster analysis: An efficient multi-crystal workflow for structure determination”
Bin Wang, Xiaodong Zoua, Stef Meets
IUCrJ,6, 854 2019

“High-throughput continuous rotation electron diffraction data acquisition via software automation.”
Magdalena Ola Cichocka, Jonas Angstrom, Bin Wang, Xiaodong Zou and Stef Smeets
J. Appl. Cryst. (2018). 51.

“Crystalline Curcumin bioMOF Obtained by Precipitation in Supercritical CO2 and Structural Determination by Electron Diffraction Tomography”
Portolés-Gil, et.al., ACS Sustainable Chem. Eng., 2018, 6 (9), pp 12309–12319, Publication Date (Web): July 19, 2018 (Research Article)

“Ab Initio Structure Determination of Cu2–xTe Plasmonic Nanocrystals by Precession-Assisted Electron Diffraction Tomography and HAADF-STEM Imaging”
Enrico Mugnaioli, Mauro Gemmi, Renyong Tu, Jeremy David, Giovanni Bertoni, Roberto Gaspari, Luca De Trizio, and Liberato Manna, Inorg. Chem., 2018, 57 (16), pp 10241–10248, Publication Date (Web): July 31, 2018, Copyright © 2018 American Chemical Society;

“[Ti8Zr2O12(COO)16] Cluster: An Ideal Inorganic Building Unit for Photoactive Metal–Organic Frameworks”
Shuai Yuan, Jun-Sheng Qin, Hai-Qun Xu, Jie Su, Daniel Rossi, Yuanping Chen, Liangliang Zhang, Christina Lollar, Qi Wang, Hai-Long Jiang, Dong Hee Son, Hongyi Xu, Zhehao Huang, Xiaodong Zou, and Hong-Cai Zhou, ACS Central Science Article ASAP, 2017

“Characterization at the level of individual crystals: single crystal MFI type zeolite grains.”
Tim Gruene,Teng Li, Eric v van Genderen, Ana B. Pinar, Jeroen Anton van Bokhoven, Chemistry. 2017 Nov 28., 2017

“Ab initio structure determination of nanocrystals of organic pharmaceutical com-pounds by electron diffraction at room temperature using a Timepix quantum area direct electron detector.”
Van Genderen, E., Clabbers, M. T. B., Das, P. P., Stewart, A., Nederlof, I., Barentsen, K. C., … Abrahams, J. P., Acta Crystallographica. Section A, Foundations and Advances, 2016 72(Pt 2), 236–242.

“Protein structure determination by electron diffraction using a single three-dimensional nanocrystal” 
Clabbers, M. T. B., van Genderen, E., Wan, W., Wiegers, E. L., Gruene, T. & Abrahams, J. P. 2017. Acta Cryst. D73, 738-748.

“Elucidation of the elusive structure and formula of the active pharmaceutical ingredient bismuth subgallate by continuous rotation electron diffraction”
Yunchen Wang, Sofia Takki, Ocean Cheung, Hongyi Xu, Wei Wan, Lars Öhrström, and A. Ken Inge, Chem. Commun., 2017 Advance Article

“Crystal Phases in Hybrid Metal–Semiconductor Nanowire Devices.”
J. David, F. Rossella, M. Rocci, D. Ercolani, L. Sorba, F. Beltram, M. Gemmi, and S. Roddaro, Nano Letters 2017 17 (4), 2336-2341

“Crystal Structures of Two Important Pharmaceuticals solved by 3D Precession Electron diffraction Tomography”
Partha P. Das, Enrico Mugnaioli, Stavros Nicolopoulos, Camilla Tossi, Mauro Gemmi, Athanasios, Gheorghe Borodi, Mihaela M. Pop
Org. Process Res. Dev. 22, 1365 (2018)

“The crystal structure of orthocetamol solved by #d electron diffraction”
Iryna Andrusenko, Victoria Hamilton, Enrico Mugnaioli, Arianna Lanza, Charlie Hall, Jason Potticary, Simon R. Hall, Mauro Gemmi,
Angew. Chem. Int. Ed. 2019, 58, 1-5

“The Nanobeam precession-assisted 3D electron diffraction reveals a new polymorph of hen egg-white lysozyme”
Arianne Lanza, Eleonora Margheritis, Enrico Mugnaioli, Valentina Cappello, Gianpiero Garau, Mauro Gemmi
IUCrJ 2019, 6, 178-188

“Crystal phases in Hybrid Metal-Semiconductor Nanowire Devices” 
J. David, F. Rossella, M. Rocci, Ercolani, L. Sorba, F. Beltram, M. Gemmi, S. Roddaro
Nano Lett. 2017, 17, 4, 2336-2341

“3D Electron Diffraction Unravels the New Zeolite ECNU‐23 from the “Pure” Powder Sample of ECNU‐21”

X. Liu, Yi Luo, W. Mao, J. Jiang, H. Xu, L. Han, J. Sun and P. Wu, Angewandte Chemie, Volume 59, Issue 3 (2020)

“Can 3D Electron Diffraction Provide Accurate Atomic Structures of MetalOrganic Frameworks?”

Z. Hang, M. Ge, F. Carraro, C. Doonan, P. Falcaro, X. Zou, Faraday Discuss., 2020

“Nanocrystals of Lead Chalcohalides: A Series of Kinetically Trapped Metastable Nanostructures”
Stefano Toso et. al., (2020) Journal:
J. Am. Chem. Soc. 2020, 142, 22, 10198–10211


Selected X-Ray publications

“Introducing the crystalline phase of dicalcium phosphate monohydrate”

Lu, B., Willhammar, T., Sun, B. et al. Introducing the crystalline phase of dicalcium phosphate monohydrate. Nat Commun 111546 (2020).

“Active site localization of methane oxidation on Pt nanocrystals”
Dongjin Kim, Myungwoo Chung, Jerome Carnis, Sungwon Kim, Kyuseok Yun, Jinback Kang, Wonsuk Cha, Mathew J. Cherukara, Evan Maxey, Ross Harder, Kiran Sasikumar, Subramanian K.R.S. Sankaranarayanan, Alexey Zozulya, Michael Sprung, Dohhyung Riu, Hyunjung Kim, Nature Communications volume 9, Article number: 3422 2018

“Ultrafast Three- Dimensional Integrated Imaging of Strain in Core/ Shell Semiconductor/ Metal Nanostructures”
Mathew J. Cherukara, Kiran Sasikumar, Anthony DiChiara, Steven J. Leake, Wonsk Cha, Eric M. Dufresne, Tom Peterk, Ian McNulty, Donald A. Walko, Haidan Wen, Subramanian K.R.S. Sankaranarayanan, Ross J. Harder, Nano Lett. 2017, 17, 12, 7696

“Methods for operando coherent X-ray diffraction of battery materials at the Advaned Photon Source”
L. Li, Y. Xie, E. Maxey, R. Harder, Synchrotron Rad. (2019). 26, 220

“Anisotropic nano-scale resolution in 3D Bragg coherent diffraction imaging”
Mathew J. Cherukara, Wonsuk Cha, Ross J. Harder, Appl. Phys. Lett. 113, 203101 2018

“High-energy coherent X-ray diffraction microscopy of polycrystal grains”
S. Maddali, J.- S. Park, H. Sharma, S. Shastri, P. Kenesei, J.Almer, R. Harder, M.J. Highland, Y. Nashed and S.O, Hruszkewycz

“Deriving spatially resolved beta dose rates in sediment using the Timepix pixelated detector”
Anna A.Romanyukha,et.al., 2017 Radiation Measurements;

“Nanoscale Hard X-Ray Microscopy Methods for Materials Studies*”
M. Holt et. al,. Vol. 43:183-211 (Volume publication date July 2013); First published online as a Review in Advance on February 28, 2013

“11 nm hard X-ray focus from a large-aperture multilayer Laue lens.”
Xiaojing Huang, et al, Scientific Reports 3, Article number: 3562.

“Ultrafast Three-Dimensional X-ray Imaging of Deformation Modes in ZnO Nanocrystals.”
Cherukara MJ, et al, Nano Lett. 2017 Feb 8;17(2):1102-1108.

“Development of a transmission alpha particle dosimetry technique using A549 cells and a Ra-223 source for targeted alpha therapy.”
Al Darwish R, et al, Med Phys. 2016 Nov;43(11):6145.
Pub Med ID: 27806616


Selected Timepix Mass Spectrometry publications

An Ambient Detection System for Visualization of Charged Particles Generated with Ionization Methods at Atmospheric Pressure
Bob Hommersom, Safaraz U. A. H. Syed, Gert B. Eijkel, David P. A. Kilgour, David R. Goodlett, and Ron. M. A. Heeren
Rapid Commun. Mass Spectrom. (2016) 30:352-358

“A Micro-pixelated Ion Imaging Detector for Mass Resolution Enhancement of a QMS Instrument”
Sarfaraz U. A. H. Syed, Gert B. Eijkel, Simon Maher, Piet Kistemaker, Stephen Taylor, and Ron M. A. Heeren
Anal. Bioanal. Chem. (2015) 407:2055-2062

  “Experimental Investigation of the 2D Ion Beam Profile Generated by an ESI Octopole-QMS System”
Safaraz U. A. H. Syed, Gert. B. Eikel, Piet Kistemaker, Shane Ellis, Simon Maher, Donald F. Smith, and Ron M. A. Heeren
J. Am. Soc. Mass Spectrom. (2014) 25:1780-1787

“Time-Resolved Imaging of the MALDI Linear-TOF Ion Cloud: Direct Visualization and Exploitation of Ion Optical Phenomena Using a Position- and Time-Sensitive Detector.”
Shane R. Ellis, Jens Soltwisch, and Ron M. A. Heeren
J. Am. Soc. Mass Spectrom. (2014) 25:809-819

“Enhanced Detection of High-Mass Proteins by Using an Active Pixel Detector”
Shane R. Ellis, Julia H. Jungmann, Donald F. Smith, Jens Soltwisch, and Ron M. A. Heeren
Angew. Chem. Int. Ed. (2013) 52:11261-11264

“Cluster Secondary Ion Mass Spectrometry Microscope Mode Mass Spectrometry Imaging”
András Kiss, Donald F. Smith, Julia H. Jungmann, and Ron M. A. Heeren
Rapid Commun. Mass Spectrom. (2013) 27:2745-2750

“Detection Systems for Mass Spectrometry Imaging: A Perspective on Novel Developments with a Focus on Active Pixel Detectors”
Julia H. Jungmann and Ron M. A. Heeren
Rapid Commun. Mass Spectrom. (2013) 27:1-23

“Biological Tissue Imaging with a Position and Time Sensitive Pixelated Detector”
Julia H. Jungmann, Donald F. Smith, Luke MacAleese, Ivo Klinkert, Jan Visser, and Ron M. A. Heeren
J. Am. Soc. Mass Spectrom. (2012) 23:1679-1688

“High Dynamic Range Bio-Molecular Ion Microscopy with the Timepix Detector”
Julia H. Jungmann, Luke MacAleese, Jan Visser, Marc J. J. Vrakking, and Ron M. A. Heeren
Anal. Chem. (2011) 83:7888-7894


Selected Miscellaneous publications

“Unique Capabilities and Applications of Microchannel Plates Detectors with Medipix/Timepix Readout”
Anton S. Tremsin and John V. Vallerga
Radiation Measurements 130 (2020) 106228:1-17

“Optimization of Spatial Resolution and Detection Efficiency for Photon/Electron/Neutron/Ion Counting Detectors with Microchannel Plates and Quad Timepix Readout”
Anton S. Tremsin, John V. Vallerga, and Rick R. Raffanti
JINST 13 (2018) C11005:1-8

“High Resolution Photon Counting with MCP-Timepix Quad Parallel Readout Operating at > 1KHz Frame Rates”
Anton S. Tremsin, John V. Vallerga, Jason B. McPhate, Oswald H. W. Siegmund, and Rick R. Raffanti
IEEE Transactions on Nuclear Science (2013) 60(2):578-585